Dammit Jim, I’m A DJ, Not A Roofer. A Little Help?

About a week ago, we had a heavy rain that had our main bathroom ceiling fan leaking water in what was just short of a steady stream of water coming out. A trip to a big box hardware store had me picking up some calk/adhesive to repair a shingle and what I figured would sealing dried and shrunken calk from original install. Nope. No old calk to patch.

My question to anyone who knows this stuff... Is it likely that I just need some sort of a cover for these two exposed pipes? The shingles look to be fine in covering the flashing, so I don't know what else it could be.

If you know and want to share a solution or idea, please leave a comment on our Facebook page. I thank you in advance.

Steve Cooper